学際大規模情報基盤共同利用・共同研究拠点

採択課題 【詳細】

EX23301 A Python Deep Learning Toolkit for Healthcare Data Analysis
課題代表者 Li Zihui(Information Technology Center, University of Tokyo)
Li Zihui (Information Technology Center, University of Tokyo)
概要

The Electronic Health Record (EHR) is an essential part of the modern medical system and impacts healthcare delivery, operations, and research. Unstructured text is attracting much attention despite structured information in the EHRs and has become an exciting research field. The success of the recent neural Natural Language Processing (NLP) method has led to a new direction for processing unstructured clinical notes. In this work, we create a python library for clinical texts, EHRKit. This library contains two main parts: MIMIC-III-specific functions and task-specific functions. The first part introduces a list of interfaces for accessing MIMIC-III NOTEEVENTS data, including basic search, information retrieval, and information extraction. The second part integrates many third-party libraries for up to 12 off-shelf NLP tasks such as named entity recognition, summarization, machine translation, etc. 

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